PoplarV1, Main, Exploration, bibRecord, 001670

Site-Dependent Differences in DNA Methylation and Their Impact on Plant Establishment and Phosphorus Nutrition in Populus trichocarpa.

Identifieur interne : 001670 ( Main/Exploration ); précédent : 001669; suivant : 001671

Site-Dependent Differences in DNA Methylation and Their Impact on Plant Establishment and Phosphorus Nutrition in Populus trichocarpa.

Auteurs : Brigitte Schönberger [Allemagne] ; Xiaochao Chen [Allemagne] ; Svenja Mager [Allemagne] ; Uwe Ludewig [Allemagne]

Source :

PloS one [ 1932-6203 ] ; 2016.

RBID : pubmed:27992519

Descripteurs français

KwdFr :
- ADN des plantes (métabolisme), ARN des plantes (biosynthèse), Feuilles de plante (métabolisme), Méthylation de l'ADN (physiologie), Phosphore (métabolisme), Phosphore (physiologie), Populus (physiologie), Régulation de l'expression des gènes végétaux (physiologie), Saisons (MeSH), Stress physiologique (MeSH), microARN (biosynthèse), Épigenèse génétique (physiologie).
MESH :
- biosynthèse : ARN des plantes, microARN.
- métabolisme : ADN des plantes, Feuilles de plante, Phosphore.
- physiologie : Méthylation de l'ADN, Phosphore, Populus, Régulation de l'expression des gènes végétaux, Épigenèse génétique.
- Saisons, Stress physiologique.

English descriptors

KwdEn :
- DNA Methylation (physiology), DNA, Plant (metabolism), Epigenesis, Genetic (physiology), Gene Expression Regulation, Plant (physiology), MicroRNAs (biosynthesis), Phosphorus (metabolism), Phosphorus (physiology), Plant Leaves (metabolism), Populus (physiology), RNA, Plant (biosynthesis), Seasons (MeSH), Stress, Physiological (MeSH).
MESH :
- chemical , biosynthesis : MicroRNAs, RNA, Plant.
- chemical , metabolism : DNA, Plant, Phosphorus.
- metabolism : Plant Leaves.
- physiology : DNA Methylation, Epigenesis, Genetic, Gene Expression Regulation, Plant, Phosphorus, Populus.
- Seasons, Stress, Physiological.

Abstract

The propagation via clonal stem cuttings is a frequent practice in tree plantations. Despite their clonal origin, the trees establish differently according to weather, temperature and nutrient availability, as well as the presence of various stresses. Here, clonal Populus trichocarpa (cv. Muhle Larson) cuttings from different sites were transferred into a common, fully nutrient supplied environment. Despite identical underlying genetics, stem cuttings derived from sites with lower phosphorus availability established worse, independent of phosphorus (P) level after transplantation. Differential growth of material from the sites was reflected in differences in the whole genome DNA methylome. Methylation differences were sequence context-dependent, but differentially methylated regions (DMRs) were apparently unrelated to P nutrition genes. Despite the undisputed negative general correlation of DNA promoter methylation with gene repression, only few of the top-ranked DMRs resulted in differential gene expression in roots or shoots. However, differential methylation was associated with site-dependent, different total amounts of microRNAs (miRNAs), with few miRNAs sequences directly targeted by differential methylation. Interestingly, in roots and shoots, the miRNA amount was dependent on the previous habitat and changed in roots in a habitat-dependent way under phosphate starvation conditions. Differentially methylated miRNAs, together with their target genes, showed P-dependent expression profiles, indicating miRNA expression differences as a P-related epigenetic modification in poplar. Together with differences in DNA methylation, such epigenetic mechanisms may explain habitat or seasonal memory in perennials and site-dependent growth performances.

DOI: 10.1371/journal.pone.0168623
PubMed: 27992519
PubMed Central: PMC5167412

Affiliations:

Links toward previous steps (curation, corpus...)

to stream Main, to step Corpus: 001513
to stream Main, to step Curation: 001513

Le document en format XML

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<term>Populus (physiologie)</term>
<term>Régulation de l'expression des gènes végétaux (physiologie)</term>
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<front><div type="abstract" xml:lang="en">The propagation via clonal stem cuttings is a frequent practice in tree plantations. Despite their clonal origin, the trees establish differently according to weather, temperature and nutrient availability, as well as the presence of various stresses. Here, clonal Populus trichocarpa (cv. Muhle Larson) cuttings from different sites were transferred into a common, fully nutrient supplied environment. Despite identical underlying genetics, stem cuttings derived from sites with lower phosphorus availability established worse, independent of phosphorus (P) level after transplantation. Differential growth of material from the sites was reflected in differences in the whole genome DNA methylome. Methylation differences were sequence context-dependent, but differentially methylated regions (DMRs) were apparently unrelated to P nutrition genes. Despite the undisputed negative general correlation of DNA promoter methylation with gene repression, only few of the top-ranked DMRs resulted in differential gene expression in roots or shoots. However, differential methylation was associated with site-dependent, different total amounts of microRNAs (miRNAs), with few miRNAs sequences directly targeted by differential methylation. Interestingly, in roots and shoots, the miRNA amount was dependent on the previous habitat and changed in roots in a habitat-dependent way under phosphate starvation conditions. Differentially methylated miRNAs, together with their target genes, showed P-dependent expression profiles, indicating miRNA expression differences as a P-related epigenetic modification in poplar. Together with differences in DNA methylation, such epigenetic mechanisms may explain habitat or seasonal memory in perennials and site-dependent growth performances.</div>
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Site-Dependent Differences in DNA Methylation and Their Impact on Plant Establishment and Phosphorus Nutrition in Populus trichocarpa.

Site-Dependent Differences in DNA Methylation and Their Impact on Plant Establishment and Phosphorus Nutrition in Populus trichocarpa.

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